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The following is a list of bosses from Mega Man X: Command Mission. While Mega Man X and Zero do not gain any weapons and techniques from defeating these bosses like in previous games, Axl gains the ability to transform into eight of these bosses: Wild Jango, Silver Horn, Mad Nautilus, Mach Jentra, Incentas, Depth Dragoon, Rafflesian and Ninetails. Axl transforming into the bosses is similar to summoning from other RPGs.

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